swiftomics

Tools and Pipelines

Click tool to configure, then drag onto files

🔬

fastp

Quality control & filtering

Quality Threshold (Phred Score)

Minimum Phred quality score (default: 15)

Length Threshold (bp)

Minimum read length after trimming (default: 15)

Trim Front

Trim N bases from front for read1

Trim Tail

Trim N bases from tail for read1

Enable Deduplication

Remove duplicate reads

Auto-detect Adapters

Automatically detect and trim adapters

🧬

bowtie2

Align reads to MEGARes database

Alignment Mode

End-to-end: entire read must align; Local: substrings may align

Preset

Trade-off between speed and sensitivity

Suppress Unaligned Reads

Don't write unaligned reads to SAM output

Suppress SAM Header

Don't write SAM header lines

⚡

SwiftAMR

Fast k-mer AMR gene detection

AMR Database

Upload AMR gene database in FASTA format (e.g., CARD, MEGARes, ResFinder)

Output Format

Results include: read name, gene, k-mer score, coverage, identity

bioinformatics.
entirely in your browser.

no queues. no ssh. no code. just results.

To get started, just upload FASTQ or FASTA files below, then drag tools from the left panel onto files to run analysis. All processing happens locally - your data never leaves your device.

drag & drop .fastq or .fasta files, or click to browse

built with biowasm · your data never leaves your browser

bioinformatics. entirely in your browser.

bioinformatics.
entirely in your browser.